Please go through all the installation steps below and make sure that

To run IGV, double-click on the IGV.bat file.

Find the zip archive on your computer and expand it.

Click on the large button for the Download Binary Distribution.

To download IGV, please visit this page and log in.

If time permits, we will use The Broad Institute's IGV (Integrated Genome Viewer) for looking at SAM and BAM files, SNPs, and variant calls.

At the workshop we will give you additional information (e.g.

Follow any installation instructions, if any.

To use it, double-click on the downloaded file.

Chose the download link appropriate to your system.

Follow the installation instructions, if anyĪn FTP client will help you transfer files easily between your computer and the cloud.

To use it, double-click on the download file.

Click on putty.exe link to download the install file.

You will need a terminal program to access the HPC cluster.

Once it's installed, open RStudio to make sure it works and you don't get any error messages.

Under Installers select RStudio - Windows XP/Vista/7/8.

To use RStudio, you need to install both R and RStudio. Please see the section for your operating system for those directions. This workshop will be using the software outlined in the install instructions below. Tools for an efficient workflow once you leave the workshop. Participants should bring and use their own laptops to insure the proper setup of Please feel free to email the instructor or arrive early to your workshop on Please make sure to install everything and try opening it to make sure it worksīefore the start of your workshop. You will need working copies of the software described below. To participate in a Data Carpentry workshop,

Please questions and information not covered here. There are no pre-requisites, and we will assume no prior knowledge about the tools.

(We will provide instructions on setting up the required software several days in advance) Data Carpentry Workshop Setup Instructionsĭata Carpentry's teaching is hands-on, so participants are encouraged to bring in and use their own laptops to insure the proper setup of tools for an efficient workflow once you leave the workshop.

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